rs46267505 SNP Detail

Summary

• ID
  rs46267505
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:52224738 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGCCCAGC CTGTCTCTTT
  CCTCCCGGGA TGCAGTCACC TCAATTCACA AGTGCCTGGA ACAATCCTGA CCAGAGTCAT
  CTATAACAAG TTCTCCCTGG ATCACTAAAG CCAAAGTCTC AGAGCTTAAA TGTGAAGCCA
  TGGTAAGCCT GTGTGTGCTG ACTGGCCAGG CCCCTCCTAT TCCTGGGCTC ATTCAGCCAG
  M
  ATTTTCTGAT TACTCACTGT GCACATATGA TATGAGACAT ATCTATCTGC AAACTGGCCA
  ACTCCCAAGG AGCCATGCTT AGAAAGTCTA GATGTCTATA GCTCGGTATT GTCTCTACCA
  GGAGCCTGAA CCAGTGGAGG ACTGTGTGCA GAGCACGCTT GCTGCCTTGT ACCCGCCCTT
  TGAAGCCACA GCCCCAACCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss139498656	ENSMUSSNP4247053	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A	C
ss324626452	CHEV_14_52606956	CHEVERUD	SCREENING_POP	f	SNP				A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46267505					SNP	C	A	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:52224738 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Arhgef40	Rho guanine nucleotide exchange factor 40			Intron
				Noncoding-Transcript-Variant
Cpgi6430	CpG island 6430			1782 bp distal
Cpgi6431	CpG island 6431			1175 bp distal
Cpgi6432	CpG island 6432			1730 bp proximal
Gm16617	predicted gene, 16617			within coordinates
Rr491848	regulatory region 491848			775 bp distal
Rr491849	regulatory region 491849			1536 bp proximal
Tssr125442	transcription start site region 125442			1756 bp upstream
Tssr128466	transcription start site region 128466			1551 bp downstream