rs46267636 SNP Detail

Summary

• ID
  rs46267636
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:47793965 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTCACCAA GCTGACGGTT
  AGAGACATGA GAAAGAGCAA AAGTGAAGAA CAGAAACTGA GCCCCAGGAA AGACCCTATA
  TCACGAGGTT AGGAAGGGAG AGGATATTGT ATCATAGGAT TCCGAAATGG GGTGGGCATG
  AAACAAAGAG AAAATCCAGC AATGTGCAGG TCCTAGAAGT CAAGGGCAGA AAGGGAAACC
  Y
  CAGGTGAATT AGGCAATCTC TCCAGAATCC ATCAAAGGAG GCTGAGGTGT GTCCCTTGCC
  TAAGCAGTGG GGGAAGGGAG GGCATCCTAA TTGGGAAAAC CTCGGTGTAA AGGTGCCAGC
  AGTAAAAGTC CTTGGAGGAA GGAGTGAAGT GGGAACAGGA ATTAAAAAGT GTTCATCCCA
  GCACTCGGGA GGCAGAGGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61788337	NES17719853	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46267636					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61788337	NES17719853	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:47793965 () rs orientation: forward

Symbol	Name	Function Class
D13Mit90	DNA segment, Chr 13, Massachusetts Institute of Technology 90	1466 bp distal
Rr272183	regulatory region 272183	1836 bp proximal