rs46269455 SNP Detail

Summary

• ID
  rs46269455
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:153060712 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTGCAAAA ACACTGCCAA
  CTGCTCATCT TTTCAATCAA AGGATTCTTA ATTGCTGATC CACTGGAAGT TACTTTTAAT
  TCTAATATTC AGAGACTGTT TTCACTCTCA GAATGTTTTC TACTAGGTTT CAACCAGTTT
  ATCCTGACTC AGGGGGAGCC CTCTCGACAT GACCACTTTC ATACATTTTT TTGTTTTAAA
  K
  TTCATCTTAC ATATCTGAGC TACACAACAG GTTTTGACAG GACTAGTGAA ATGGTTACTA
  TTGTCAAGAA AATGAACATG GCTATCATGC CAGTTACTCC TTTTTGGTGA CAATTATACA
  TGATCGAGCA TCATGGCTTC CGATCCCTGG CAGTGGTGAC TGGAACACCA TGGAGAGCAG
  GAAGCAACAG TAACTATGAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss60822420	NES16493706	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs46269455					SNP	G	G	G	G	G	G	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60822420	NES16493706	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:153060712 () rs orientation: forward

Symbol	Name	Function Class
Cpgi864	CpG island 864	804 bp proximal
Lamc2	laminin, gamma 2	within coordinates
Rr420623	regulatory region 420623	1071 bp proximal
Tssr14250	transcription start site region 14250	1045 bp downstream
Tssr14251	transcription start site region 14251	1105 bp downstream
Tssr14252	transcription start site region 14252	1136 bp downstream
Tssr14253	transcription start site region 14253	1159 bp downstream
Tssr14254	transcription start site region 14254	1176 bp downstream