rs46270690 SNP Detail

Summary

• ID
  rs46270690
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156667471 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATTA AGCATATGAA CTCAGAAAAT
  R
  TCAGTACTGA AGAAAAACTG GCAAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145806742	ENSMUSSNP101493	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46270690					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156667471 () rs orientation: forward

Symbol	Name	Function Class
Angptl1	angiopoietin-like 1	within coordinates
Gm68672	predicted gene, 68672	1977 bp upstream
Ralgps2	Ral GEF with PH domain and SH3 binding motif 2	within coordinates
Rr421263	regulatory region 421263	949 bp distal
Rr421264	regulatory region 421264	701 bp distal
Rr421265	regulatory region 421265	1943 bp proximal
Tssr9579	transcription start site region 9579	989 bp downstream
Tssr9580	transcription start site region 9580	923 bp downstream