rs46272255 SNP Detail

Summary

• ID
  rs46272255
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:24006711 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACATGACTG TACTTCCAGA
  GATACCAGGA CTAAGAGTTC AAAGCCAGTT TTGACTACTT AGGAAGCTAT TAGAGGAAAA
  TATACTTAGG TACATTTTAT TTATTTTTTC AATAGTATCC CACTATGTAG CTCTTGAACT
  CATAACAGCC CTCCTGCCTC AGCATCCCGG TTCTTACCAC TGGCTAGGGT CTGGTCAGAT
  A
  TTTCCAGGTT TTTGGTTCTT TTTCAGAGAA TTGACATACA GACACAGATT CATAAAAGTA
  TGGAGGAAAT CTTATTCAAA GCAAAGGATG GGTCAGATGC ACTGTAAACT CTGACTGCAG
  GCCCTTGTTA GCCGAGCTTT CTCTTATGGG CTTCGGTAGT TACCAGAACT CTTACTTTGA
  GTGCTCCTCT ATTTTGATTG                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145332761	ENSMUSSNP155453	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46272255					SNP	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24006711 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8693	CpG island 8693	1417 bp distal
Flywch2	FLYWCH family member 2	1656 bp upstream
Tssr146663	transcription start site region 146663	1654 bp upstream
Tssr146664	transcription start site region 146664	1615 bp upstream
Tssr146665	transcription start site region 146665	1500 bp upstream