rs46275355 SNP Detail

Summary

• ID
  rs46275355
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:78430321 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAATTTGGA AAAACTCCAA
  GAGGTTTTCC AGGACAAGCA GGAGAGCCCA TCTCAGTTTT TAGAACGCCT CACAAAGGCC
  TTATTACAAT ACACTAAGTT GTTACTAAGG TAAACAATTT TAGATGACCT ACTTTTTTCC
  CAGAGCTGCC CCAACATAAA AGCTAAACTT AGGCATTTGG CGAGGGGGCC TCTAACTCCA
  Y
  AGGCGGAAGT CTTGGCGATG GCCTTCAAGG TGTACCATGA GAGAGATGAG AAAGCCCAAA
  AACAAAAACA CTGCAAGCTG GCAAAGGCTG TCCGACCAGC TCTAGCTACT ACCCCGAACT
  CCTGGCCTTC TAAGGTTCAG GGACCACTAG CCCCTTGCTA TAGATGTGGT CAGCAAGGTC
  ATTGGGTGAG GTTTTGCCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss136668101	ENSMUSSNP5739676	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
ss323016426	CHEV_9_78370846	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46275355					SNP	C	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:78430321 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22070	CpG island 22070	1917 bp distal
Gm47430	predicted gene, 47430	882 bp downstream
Gm69163	predicted gene, 69163	1980 bp upstream
Rr206776	regulatory region 206776	920 bp distal
Rr383643	regulatory region 383643	1404 bp upstream