rs46275376 SNP Detail

Summary

• ID
  rs46275376
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:41722206 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCTCTCCA GATGGTAATG
  ATTATACCAC AGGCACCATC AGGAGGCAGG GGACTAGGGA TGCTGGCATG GGTATCACCC
  TATATTCTAT TTAATGCCTT TGTTTGTATA TCACTGCACA AAGAGGAGAG ATGGTCCTTC
  CTGGGGCTGC CCACACAACA GGCAACTTGC CTACTTTTAA AAACAGTTCT TGCATTCTTT
  R
  AGTCTGATAT CACATCTTTA GGCCTTGATC CGCATTTGCA TGTGGTCTAG CTTACTTCTC
  CCAGCTACTC CCCCTAATTG CAACCAGAGA ACAGATACCT CTAGTGAAGG CCACCCCAGT
  TAGCCTTTCT TCTCCTAGAG AAGCCAGAGC TTGTGATATA CCAAGCAGTC AGGGGAAAGT
  AGCAACTGTG TACTCCTCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61773533	NES17711040	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs46275376					SNP	A	A	A	A	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61773533	NES17711040	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:41722206 () rs orientation: forward

Symbol	Name	Function Class
Gm32184	predicted gene, 32184	within coordinates
Rr478020	regulatory region 478020	within coordinates
Tssr4053	transcription start site region 4053	291 bp downstream
Tssr4054	transcription start site region 4054	596 bp upstream
Tssr4055	transcription start site region 4055	829 bp upstream
Tssr119410	transcription start site region 119410	562 bp upstream
Tssr119411	transcription start site region 119411	566 bp upstream