rs46275857 SNP Detail

Summary

• ID
  rs46275857
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:77969582 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCCATGAG GACTTCCCGT
  GGTGACGGCG ACTCTCTGTT ATGTTTTTCT TGACCAAAAA CACTCCTAAG CTGGTATGAG
  TAGGTCATTC AAAGGAAATT TCTGTGCTAC TTTCTTTCAG AAAAGAAAGC TTTCCTCAGC
  TACTGCTTCT GTGACATGAT GTGAGATCCA GAGAGCAGCA GTCCATAACC AAATCGCGTC
  S
  ATCATGAAGA CTTTGATGTG AATCCTTGTT GAAAAATTGT TTTTTTTGAT ATTTTAAATT
  TATAGTATAC ATTTGACTCA ACCTAGTCGA GTAGAGTTCT GCAGAGTCCC CCTTTTTTCC
  CCCTCAGAGA GTTTACATAC TGCTCCAGAA GGAAGAATTA TTATTTTCTG GCTAGCTACT
  AAGGTTGTGA GTGTTGTTTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63192708	NES17468830	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46275857					SNP	G	G	G	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63192708	NES17468830	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:77969582 () rs orientation: forward

Symbol	Name	Function Class
Pstpip2	proline-serine-threonine phosphatase-interacting protein 2	within coordinates
Rr541209	regulatory region 541209	1642 bp distal
Rr541210	regulatory region 541210	1140 bp proximal
Tssr152066	transcription start site region 152066	306 bp upstream
Tssr152067	transcription start site region 152067	338 bp upstream
Tssr152068	transcription start site region 152068	368 bp upstream
Tssr152069	transcription start site region 152069	469 bp upstream
Tssr152070	transcription start site region 152070	584 bp upstream
Tssr152071	transcription start site region 152071	615 bp upstream
Tssr152072	transcription start site region 152072	636 bp upstream
Tssr152073	transcription start site region 152073	669 bp upstream
Tssr152074	transcription start site region 152074	698 bp upstream
Tssr152075	transcription start site region 152075	718 bp upstream