rs46277916 SNP Detail

Summary

• ID
  rs46277916
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:82068782 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCACACTCCT CTAACGCCCA ATCCTCCTCC CAGGGACAGT
  CAGTGGGGAC TAGTCTGAGC TACCTTCTCA CATCCTTTTA CATTTCCGCC TTCTGCAGTC
  K
  CTTCTCCTGT CCGGGTCGCA TTGTGATTGC CTTGCCCCCC CCCCCCCCCG CCCCGCGCGC
  TTCGCCCCTG TGATCCCGCA CCCCAGGATT GGCAGCTGA                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145259361	ENSMUSSNP3216646	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss322727466	CHEV_8_83866052	CHEVERUD	SCREENING_POP	f	SNP			G	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46277916					SNP	G	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:82068782 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20635	CpG island 20635	within coordinates
Gm51582	predicted gene, 51582	within coordinates
Inpp4b	inositol polyphosphate-4-phosphatase, type II	403 bp upstream
Rr666047	regulatory region 666047	469 bp distal
Rr666048	regulatory region 666048	within coordinates
Rr666049	regulatory region 666049	420 bp proximal
Tssr78167	transcription start site region 78167	348 bp upstream
Tssr78168	transcription start site region 78168	371 bp upstream
Tssr78169	transcription start site region 78169	408 bp upstream
Tssr78170	transcription start site region 78170	454 bp upstream
Tssr78171	transcription start site region 78171	548 bp upstream