rs46278504 SNP Detail

Summary

• ID
  rs46278504
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:82949001 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTGTATCC TGATAGTTAT
  TAAAGTTAGA TGACTGTTTT TAAATACTAT GATATTTACA TAGTGTGGTG GCTTCTACAG
  TTCATAGTCT ACTCTTGGAG TGGTGTAGTG GATGGTGCCC GACACCCTGG CACAAGGACT
  GGGGATTCAG CTACTGAACC ACACCCCTCA CCGTGGGAGG GAATGACAAC TCAGCTTCAA
  Y
  ACCTCAACTG GAAAAATGCA GCTGACCTTT TAAATCCAAC CAATGGGTTA ACCCTAAATG
  CACAAGTAAC AATGAAGAAA TACAAGAGAC ATGAAGAAAT CAAGGCAATG GGACTCCTCT
  GGAAAATGCC AGTTCTCCAG TGAGGGATTC AGTGAAAGAG AATTAGAGGA AATCGCACAC
  ACAAAAAAAA GTTAAAAGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60904292	NES15955667	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs46278504					SNP	C	C	C	C	C	C	C	C	C	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60904292	NES15955667	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:82949001 () rs orientation: forward

Symbol	Name	Function Class
M1ap	meiosis 1 associated protein	within coordinates
Rr632713	regulatory region 632713	552 bp distal
Rr632714	regulatory region 632714	818 bp distal