rs46278547 SNP Detail

Summary

• ID
  rs46278547
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135765462 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    tggtcctca gacatggaaa ggccagaatc
  tgaagctaag ctcttttata ggtaaaatga ctaaaacttc agagagctta agtgaccagc
  ctaaggccac acagtaaaag ctgggcttaa aactcagacc ttttgatccc ccaaagagtc
  R
  tcttctggct tctgctgttt ttctTTATTG CCCATGAAAG GTGACCCCTG TGGCTTGTTG
  TGAGGGTGGT CAGATGGTAA GAAGGTGGTG AAAGCGCAGG GCCCTGGGGA CATGCTCCTA
  GTTACCCCTC CAGCTCCCCC ATCTCCTCCT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss145548026	ENSMUSSNP1502614	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss319993840	CHEV_1_137734301	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs46278547					SNP	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135765462 () rs orientation: forward

Symbol	Name	Function Class
Rr419294	regulatory region 419294	1301 bp distal
Rr419295	regulatory region 419295	992 bp distal
Rr419296	regulatory region 419296	139 bp distal
Rr419297	regulatory region 419297	25 bp proximal
Tnnt2	troponin T2, cardiac	within coordinates
Tssr9005	transcription start site region 9005	1328 bp downstream
Tssr9006	transcription start site region 9006	686 bp upstream
Tssr9007	transcription start site region 9007	1183 bp upstream