rs46278965 SNP Detail

Summary

• ID
  rs46278965
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:81335044 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAAGAGCA CATAGCCCTT
  GGAGTAGAGG GGCAGCAGGC TGGAGCAGCG TGGGAAGGCG CACACACAGT TCCAGCCCAG
  CAGGGGCAGC AGGCCCAGGA TAGCTGCCAG TAGCCAGCAC AGACCGATGC AGCCATACAC
  ACGGCTGGTC TTGGTGGCCC CACTCTCAGC CACCCGCACC ATGGTGGCGA AGCGCTCGCC
  R
  GCCGTGAAGA GCAGACTGAA GGTGGATGCG GCCAAGGCCA TGAAGAGCAG GCCCTCCCGC
  AGGAACCAGT GCACCGGTGA CAGCTGGAAG GTACGAGTCC CTGACAGCAG CACGTTGACC
  ACGTAGGCCA GGCCTGTGAG CAGGTCACTC AGTGTGATGT TCAGCAGGCA GTAGTACACC
  CAGCGGCGGG ACCGCATGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61292397	NES16908903	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46278965					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61292397	NES16908903	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:81335044 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1994	CpG island 1994	within coordinates
Rr435688	regulatory region 435688	191 bp proximal
S1pr4	sphingosine-1-phosphate receptor 4	Coding-Synonymous
Tssr98631	transcription start site region 98631	386 bp downstream
Tssr98632	transcription start site region 98632	412 bp downstream
Tssr98633	transcription start site region 98633	440 bp downstream
Tssr98634	transcription start site region 98634	476 bp downstream