rs46279035 SNP Detail

Summary

• ID
  rs46279035
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:19308428 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTAGGCAG AAAGAAGAAT
  GCAGCTTCCC CTTACTGCCT GGCACACAGG TGCTCTGCAA ATATCCGTGG AAAAGAGTGT
  CCTGCTTCAG AATAGGTGTT GATTGAATCA TGAAAGTATG GGTCCTGGTG CCTGCCTGTC
  TTGGCTACCA AAAAGGCCAA GTGGTCTAAC CAGACTTAGT CCTATCTCAC TGAAAGAGTA
  K
  GGGGCTCTGT CCCAGAATGG GATACTCTCT TAAAACCTAC AGGTGTCCTC TTCTGGCAGC
  ATCTGAAGAC AGCTACATAT TATAATAATA ATTAATAAAT CTTAAAAAAA AACCCTACAT
  TCTCTTTTCA AGTTGAGGGA ACAAAATAAC CTACATGTTA GCAAATAAAT AAGCCAAGAT
  CCTTTAGAGG GGCTGGGGAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148479142	ENSMUSSNP1385529	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46279035					SNP	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19308428 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18500	CpG island 18500	837 bp distal
Gemin7	gem nuclear organelle associated protein 7	1160 bp upstream
Rr380485	regulatory region 380485	within coordinates
Rr643193	regulatory region 643193	1546 bp distal
Rr643194	regulatory region 643194	360 bp distal
Rr643195	regulatory region 643195	845 bp distal
Tssr70933	transcription start site region 70933	1140 bp upstream
Tssr70934	transcription start site region 70934	1126 bp upstream
Tssr70935	transcription start site region 70935	1100 bp upstream
Tssr70936	transcription start site region 70936	658 bp upstream