rs46279061 SNP Detail

Summary

• ID
  rs46279061
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:68914085 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T CCCATTGTGG GTGCTGAAAA CCAAACTTGG GTTCTACACA
  AGAAAAAAAT TGCTGGGCCC CCTAGATTGC CTTTAAAGAG AAGGTATAAT TGAGAGCGTA
  R
  AGCAGGCGGA GGGTAGAAAT TAAGAGCTAC TGTGAAATTC CTGTCACCAT GTTACTGAAG
  TTTGTGAGTT TCTTAAGCTG AGCCATGTGG AGAGTTGGAT T                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	MSM/Ms
ss135264505	ENSMUSSNP1910802	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	MSM/Ms
rs46279061					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68914085 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13255	CpG island 13255	265 bp distal
Rr397713	regulatory region 397713	1963 bp downstream
Rr578109	regulatory region 578109	1751 bp distal
Rr578110	regulatory region 578110	within coordinates
Smc4	structural maintenance of chromosomes 4	within coordinates
Tssr29507	transcription start site region 29507	1731 bp downstream
Tssr29508	transcription start site region 29508	1610 bp downstream
Tssr29509	transcription start site region 29509	1439 bp downstream
Tssr29510	transcription start site region 29510	1398 bp downstream
Tssr29511	transcription start site region 29511	1267 bp downstream
Tssr29512	transcription start site region 29512	1010 bp downstream
Tssr29513	transcription start site region 29513	806 bp downstream
Tssr29514	transcription start site region 29514	680 bp downstream
Tssr33522	transcription start site region 33522	323 bp upstream