rs46279705 SNP Detail

Summary

• ID
  rs46279705
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:25113947 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGCAAGAAC CATAAACCTA
  ATAGTTCATT TAAGGGTGTA TACGCCACCA TGACATAACT GTTTTCTACT GAACTCTGTC
  TCCTAAAGGT TCTTCTGATC TCCCACAGAC TGGCTACCCA GCCTTTACCT CATGGGCCTT
  TGGGAAGCAC TGAAGATCTA AATTATAACA ATCTTGGAAC ATCAGCACTG AATTTGGTGT
  Y
  TATTTGAGGG ACTTTAAGAC TGCCAAAGCA ATAGGGATTG ATGAACTTAA ATATTGGGTG
  ACATTTGTTG GAGCCAAAGG GACAATGAAT AAGGAAGTCT TTTCTAGAAG CCTCCAGGAA
  TGAGAGGATA TATGAATTAT TCCTTCAAAA GAAGTGAATT GATAAACAAA ATTTTCATTA
  TTTATTAATT TATTTACTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60980601	NES16142453	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46279705					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60980601	NES16142453	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:25113947 () rs orientation: forward

Symbol	Name	Function Class
4732471J01Rik	RIKEN cDNA 4732471J01 gene	within coordinates
Cxcl17	C-X-C motif chemokine ligand 17	1636 bp upstream
Rr164493	regulatory region 164493	447 bp distal
Rr170193	regulatory region 170193	948 bp distal
Tssr2143	transcription start site region 2143	1720 bp upstream
Tssr2144	transcription start site region 2144	1572 bp upstream
Tssr2145	transcription start site region 2145	1548 bp upstream
Tssr2146	transcription start site region 2146	1535 bp upstream
Tssr2147	transcription start site region 2147	1490 bp upstream
Tssr71243	transcription start site region 71243	1706 bp upstream
Tssr71244	transcription start site region 71244	1681 bp upstream
Tssr71245	transcription start site region 71245	1666 bp upstream
Tssr71246	transcription start site region 71246	1637 bp upstream
Tssr71247	transcription start site region 71247	1609 bp upstream