rs46280542 SNP Detail

Summary

• ID
  rs46280542
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:65073131 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G ATTTGCCTAA GCCTGAGAAT TTGGGCTTAG GAGTCTTGTT
  GCAGTTATTT ATAATCTTGT AAGAATTTGT TTAATAAAAC AATCTTTTGT TTCTACATTA
  R
  TCAACAATAC AGCAGCCTGG TGTGAGCCAT TCTTTCCAAG AATGACAAAT CCTAATGCCT
  TATTCTTCTT AGGTTCTTTT ATGTTGTTCT TACATCACCT A                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss145836195	ENSMUSSNP1584938	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs46280542					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:65073131 () rs orientation: forward

Symbol	Name	Function Class
Dreh	down-regulated in hepatocellular carcinoma	975 bp upstream
Rr392835	regulatory region 392835	1180 bp downstream
Rr529706	regulatory region 529706	427 bp distal