rs46282771 SNP Detail

Summary

• ID
  rs46282771
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127203519 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCACCTGA CAACAAGGAG
  CCTATCAAAA TGGGGGAGGG GGGAATGCAT ATTTCTATTT CCATTCCTGT GATAAGAAAA
  GAAAGTAATG GGGTTTCCAA GGCTCCTCCT CTCCAGTGCC CCCACACTGA AGTCACAGTG
  TGGCTGCCAC ACCCACATTT TATATGGTGC TGGGGTTCAG AACTCAGCCA TTCATCCTTG
  Y
  GCAGCCAGGG CCTTCCACTG AGCCTCCTCA GTCCCTTCTT ATCTTTGTCC CTTTGAGACA
  AGGTTTTACC TTGTAGCCCA GGCAAGTCCC CAACTCACAG CAACCTCCAT GCCTCAATCT
  TCGTATTCCT GGGGTTACAA ATACGAGCCA CCACAGATGG CTTTAAATTG GAACGCTGTT
  AGGTAAACCA TGTTTTATTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135862683	ENSMUSSNP2919630	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss320953868	CHEV_3_127112788	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46282771					SNP	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127203519 () rs orientation: forward

Symbol	Name	Function Class
Ank2	ankyrin 2, brain	within coordinates
Cpgi13790	CpG island 13790	955 bp distal
Gm52631	predicted gene, 52631	within coordinates
Rr584773	regulatory region 584773	914 bp distal
Rr584774	regulatory region 584774	321 bp distal
Tssr35571	transcription start site region 35571	983 bp upstream
Tssr35572	transcription start site region 35572	889 bp upstream
Tssr35573	transcription start site region 35573	862 bp upstream
Tssr35574	transcription start site region 35574	827 bp upstream
Tssr35575	transcription start site region 35575	806 bp upstream