rs46284054 SNP Detail

Summary

• ID
  rs46284054
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:37693332 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCTATCAAT ATTTTGGGGG TCTTAGGTTA TTTTTAAAAC
  TCTATGGAAT TTTTAATTCC ACATACAGCC CTTTTCACTA CATCCTGAGC TATAGCGTCC
  C
  TATAATAAAT AACCAAATTC CATAGTATGT AAAGACGCAA AAAGCATTCC CAGCTTACTA
  AAGTCCCCCA CCCCGTGACA GACATATGGC TAAAGCTAA                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss134809951	ENSMUSSNP7044298	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss320711441	CHEV_3_37538105	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46284054					SNP	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37693332 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13100	CpG island 13100	498 bp proximal
Gm42922	predicted gene 42922	922 bp downstream
Rr575523	regulatory region 575523	274 bp proximal
Rr575524	regulatory region 575524	908 bp proximal
Rr575525	regulatory region 575525	1593 bp proximal
Rr575526	regulatory region 575526	1701 bp proximal
Spry1	sprouty RTK signaling antagonist 1	764 bp upstream
Tssr28908	transcription start site region 28908	481 bp upstream
Tssr28909	transcription start site region 28909	722 bp upstream
Tssr28910	transcription start site region 28910	745 bp upstream
Tssr28911	transcription start site region 28911	762 bp upstream
Tssr28912	transcription start site region 28912	802 bp upstream