rs46284318 SNP Detail

Summary

• ID
  rs46284318
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:90406156 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAAACACAA GACATAATGT
  AACTTCTGCT TATGAGTTAC ATGGTCAACA GAGTGAAATG ATCCTCAGAT TAATATATTT
  GTAAACAACA CATATGACAA AAGGCTGTTA CTCAAAATAT GCAGAAGATT CTTGAAACTC
  AATGATAAAA AAGTAATACT CAAATAATAG GTCAGAGTTA AAACACTACA CTAATGACAG
  Y
  TGAGTGCAAT CAAACGTTTG AAAATTTACA TTTCAAATGC TATCCCGAAA GTCCCCTATA
  CCCTCCCCCT GCACTGCTCC CCTACCCACC CACTCCTACT TCTTGGTCCG GGTATTCCCC
  TGTACTGGGG CATATAAAGT TTGCAAGACC AAGGGGCCTC TTTTCCCAAT AATGGCCAAC
  TAGGCCATCT TCTGCTACAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62969032	NES17419714	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46284318					SNP	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62969032	NES17419714	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:90406156 () rs orientation: forward

Symbol	Name	Function Class
Nrxn1	neurexin I	within coordinates
Rr336618	regulatory region 336618	1645 bp proximal