rs46286597 SNP Detail

Summary

• ID
  rs46286597
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:107266704 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGCTGATAGG AGTCAGCTAG TGACAGCTTT CATTTTAGCT
  AAGCCCAGAA TGACCAAGGG CAAGGTGATT GCTGGTATCT TAGTGGTTGA GCAGCCTGGT
  Y
  TTGAACCATT TTCTCTGTCT CTTGGTCCTG TCCCTTCATC AGTTCTGTCA AATATGCAGA
  GAATGATTGG TTCAGAATGC AACAGAAATC CTGCCTGGGT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61046438	NES16082556	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46286597					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61046438	NES16082556	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:107266704 () rs orientation: forward

Symbol	Name	Function Class
Ppfibp2	PTPRF interacting protein, binding protein 2 (liprin beta 2)	within coordinates
Rr166477	regulatory region 166477	within coordinates
Tssr68436	transcription start site region 68436	1891 bp downstream
Tssr68437	transcription start site region 68437	1777 bp downstream
Tssr68438	transcription start site region 68438	1627 bp downstream
Tssr68439	transcription start site region 68439	1293 bp downstream