rs46287315 SNP Detail

Summary

• ID
  rs46287315
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:120755503 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGGAATGG ATACAAAAAA
  ATGTGGTACC TTTACACATT GGAGTACTAC TCAGCTATTA AAATGAATGA ATTTATGAAA
  TTCCTAGGCA AATGGTTGGA CCTGGAGGGC CTCATCCTGA GTGAGGTAAT TTAATCACAA
  AAGAACTCAA ATGATATGTA CTCTCTGATC AGTGGATATT ATCCCATAAA CTTAGAATGC
  Y
  CAAGATATAA GATACAATTT GCAAAACACA TGAAAATCAA GAAGAACGAA GACCAAAGTC
  TGGACACTTT GCCCCTTCTT AGAATTGGGA ACAAAATACC CATGGAAGGA GTTACAGAGA
  CTAATTTTGG AGCTGAGACA ATAGGATGGA CTATCTAGTG ACTGCCATAT CCAGAGATCC
  ATCCCATAAT CAGCCTCCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss134396162	ENSMUSSNP5709657	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss325960956	CHEV_X_118959415	CHEVERUD	SCREENING_POP	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs46287315					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:120755503 () rs orientation: forward

Symbol	Name	Function Class
Rr395603	regulatory region 395603	207 bp upstream