rs46287712 SNP Detail

Summary

• ID
  rs46287712
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:130489260 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAAGAAAA TGGAGACAGA
  GAAGAGAGTA GAGTAGGGAG CAGGACACCA GGTCAGGGGT GGGGCTGAGG GAGTCTGGAG
  TCGGGCGCAG GCTTGGCTAT GCAGCAACAG GTTTGTCAGT GTAGGGAAGT GGCTCCTCCT
  GGCCGATGGC GACAGGCTTC CCGACTTCCT GCGGAATGCT GGCTTTGCTC TGACTGCAGT
  Y
  CAGGCTGAGT CTGCCCATCT GAGAGGGAGA AGAGGGCACT TGTGGACCTG ACACCTAACG
  ATGTAGTTGA AGATGCTGGT TGTGCCCGAG GAACAACGCA AGATGGAACT TACCGACGTA
  CAGATCAAGT TAATTCAGTT AGGCTGGTTC TGGTGGCATA CTTGATCCCT GCACTCAGAA
  AGCAGAGGCA GGTGGATCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61080640	NES16590406	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46287712					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61080640	NES16590406	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:130489260 () rs orientation: forward

Symbol	Name	Function Class
Gm65113	predicted gene, 65113	1013 bp downstream
Ostc	oligosaccharyltransferase complex subunit (non-catalytic)	306 bp downstream
Rr398016	regulatory region 398016	1272 bp downstream
Rr585194	regulatory region 585194	1258 bp distal
Rr585195	regulatory region 585195	1377 bp distal
Rr585196	regulatory region 585196	542 bp distal