rs46289894 SNP Detail

Summary

• ID
  rs46289894
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:53616034 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAATGTTG AACACTTTAC
  ACATGTAGGC TGAACTCTCT TGGAATGGAT GCTGGCTGAA TGAGGGCAAG CCACATTTGT
  TAAGTTCCTT AACGGAGTTC TTTATTTCAC AAGCAAAAGT ACTTGTTGAG AGATATAAAA
  ATGCTTGCCT ACAAGAGTTC CAATTGATCA TGTGATTTTT AAAAAAAGAT TTATTTTTTT
  W
  ATTATATGTA AATACACTGT AGCCATCTTT AGACACACCA GAAGAGGGCA TCAGATCTCA
  TTAGGGATGG TTGTGAGCCA CCATGTGGTT GCTGGGATTT GAACTCAGGA CCTTCAGAAT
  GAAGAACAGT CAGTGCGCTC TAAGCCATCT CTACCTACTA AGCCATCTCA TCAGCCCCGA
  TCATATGATT TTTAAAGAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss136502094	ENSMUSSNP4665214	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs46289894					SNP	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:53616034 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21758	CpG island 21758	856 bp proximal
Rab39	RAB39, member RAS oncogene family	within coordinates
Rr401371	regulatory region 401371	1485 bp upstream
Rr679060	regulatory region 679060	1011 bp proximal
Rr679061	regulatory region 679061	1488 bp proximal
Tssr89614	transcription start site region 89614	1477 bp downstream