rs46290060 SNP Detail

Summary

• ID
  rs46290060
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:93870131 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCAA TAAAACTCTG CAAACCAAAA
  C
  CACACTTATT ATGTCCAGAA ACCAA                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147378546	ENSMUSSNP2046931	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss323407259	CHEV_10_93497014	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46290060					SNP	C	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:93870131 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2121	CpG island 2121	1037 bp proximal
Fgd6	FYVE, RhoGEF and PH domain containing 6	1732 bp upstream
Gm49628	predicted gene, 49628	within coordinates
Rr402165	regulatory region 402165	1446 bp upstream
Tssr95293	transcription start site region 95293	1180 bp upstream
Tssr95294	transcription start site region 95294	1775 bp upstream
Tssr95295	transcription start site region 95295	1788 bp upstream
Tssr98985	transcription start site region 98985	1459 bp downstream
Tssr98986	transcription start site region 98986	1502 bp downstream
Tssr98987	transcription start site region 98987	1520 bp downstream
Vezt	vezatin, adherens junctions transmembrane protein	within coordinates