rs46293042 SNP Detail

Summary

• ID
  rs46293042
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:127703903 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAATGTTA TAGTTTAGAT
  TAATTCCTGC TTTAAATTCA GTTGATCTTA AGTCTAACCT GGTTTATCAA ATTTGCAAGT
  TGTTTTTGTC TGAGACAGTG GTTTGTTTTT GTTTTTTTTT TTTGTTTTTT TATAACTGTG
  GGTTTTGCAG TCCCTGTTCT TTTAATCTGT TTTAATCTGT TTTGAGTCTT GCTCTTTCTG
  R
  ATTATTTTGT ATCATTCTTA GGTCAATAGT GGTGTTGTAG AGAAGAAAAG AACCTATTTA
  TAATGCTTAT GCTAAGAGAA TCCAGTTTTA ATTTCAGTTC TCTAAAAGTA GCAGTGAATT
  AGTGAGCACT AAGTAACCTT GGCTTTTTCA CAGTAGTCCT GGATCATGCT GGTAGAAAGT
  ACAAGTCAAA ATCGTTGTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60798938	NES16471896	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46293042					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60798938	NES16471896	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:127703903 () rs orientation: forward

Symbol	Name	Function Class
Ccnt2	cyclin T2	Intron
Cpgi690	CpG island 690	1229 bp distal
Rr417684	regulatory region 417684	1992 bp distal
Rr417685	regulatory region 417685	1119 bp distal
Tssr8489	transcription start site region 8489	1928 bp downstream
Tssr8490	transcription start site region 8490	1894 bp downstream