rs46293427 SNP Detail

Summary

• ID
  rs46293427
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:32688902 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACTA ACGACAGTCA GGAATTCGAG
  A
  GCGAACTCCT GTCACACTTT ACTCA                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147954652	ENSMUSSNP7046992	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss325137914	CHEV_16_32868618	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46293427					SNP	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:32688902 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8198	CpG island 8198	121 bp distal
Rr323396	regulatory region 323396	1804 bp proximal
Rr325218	regulatory region 325218	within coordinates
Rubcn	RUN domain and cysteine-rich domain containing, Beclin 1-interacting protein	within coordinates
Tssr140827	transcription start site region 140827	1015 bp upstream
Tssr140828	transcription start site region 140828	252 bp upstream
Tssr140829	transcription start site region 140829	214 bp upstream
Tssr140830	transcription start site region 140830	164 bp upstream
Tssr140831	transcription start site region 140831	1426 bp downstream