rs46294831 SNP Detail

Summary

• ID
  rs46294831
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:62248262 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCATGGCA CATGAATTTA
  ATTCATCTAC CCAAATCATG GAACAGTGCA TTGCTTTCTA TTTATTTGAG TCACCATGTC
  CCATGTTTGT GTTTTATTAT TATTAATCAA TGAATGTTTT TGACAAACTA ATAGCTTAGA
  ACTTGTGTGA GGGTGTGAGG TATTGTGCCC TGATATGGGC CTAGCAGTTG TCCTTACTCA
  W
  TATTCTTGTT TTCTACCGTT GATCTAAAGG AAAAGGGACA ATCAGAGTGG AATGTTTTGG
  AGTAGATCTA AGCAATAGAG CAGTCACATT CCCCCCCACT TTTTTTTCCT TGATTAATCA
  GACGACTGGA ATCAGTCTAT AGAAATGTCA CACATGCAAT ACACAAGCAA GCCTGTTTTA
  TTTTAGACAT ACAGTCTTAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss60415938	NES15920344	PERLEGEN	MM_PANEL2	f	SNP	A	T	A	T	A
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs46294831					SNP	A	T	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60415938	NES15920344	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:62248262 () rs orientation: forward

Symbol	Name	Function Class
9330121J05Rik	RIKEN cDNA 9330121J05 gene	309 bp upstream
Arhgef26	Rho guanine nucleotide exchange factor 26	within coordinates
Cpgi13214	CpG island 13214	430 bp distal
Gm33923	predicted gene, 33923	550 bp downstream
Rr77681	regulatory region 77681	within coordinates
Rr375082	regulatory region 375082	442 bp upstream
Tssr29350	transcription start site region 29350	1829 bp downstream
Tssr29351	transcription start site region 29351	1804 bp downstream
Tssr29352	transcription start site region 29352	1231 bp downstream
Tssr29353	transcription start site region 29353	783 bp downstream