rs46296190 SNP Detail

Summary

• ID
  rs46296190
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:40577491 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCACCGGT ATTCTAGAAC
  ACCTGCCCTT TCAGCACTAG GTACTGATAA CAAGGTAGTC CAAATCCTAG AATCTAAGTC
  TCCTGTCTCC ACATCCTCAC TTTCCATGAG ACTTTCAGAT GGGATCTCAA GATAGTCTTA
  GAGAAGCAGG CACCAAAGCA GAGTCGAATA TACAAGGATT CTGTAAAGGG AAATGTTTGC
  R
  TGAAAAGAAG GAACTAAAAG TCCAGGACAG CTGTCCTAAG TGGACAGAGT CCATCTTTCC
  CCCAGGGTGC GGTCTATCTC AGCCCTCCTG TGCTAGGTCA GCAGCCTAGG GGAGGCGTGA
  CCTCACCAGG AGCCAAAGAA AGTAGGGATT TCACCCCTAC TGTCCGTCCG GTGTAATTTC
  CCCATCACAC GCAGTGTGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60393135	NES15896681	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs46296190					SNP	A	A	A	A	A	A	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60393135	NES15896681	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:40577491 () rs orientation: forward

Symbol	Name	Function Class
1700017G19Rik	RIKEN cDNA 1700017G19 gene	430 bp upstream
Rr575827	regulatory region 575827	82 bp proximal
Rr575828	regulatory region 575828	378 bp proximal
Rr575829	regulatory region 575829	1941 bp proximal
Tssr33066	transcription start site region 33066	424 bp upstream