rs46296227 SNP Detail

Summary

• ID
  rs46296227
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:33956997 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGGGTCCG AGATGCTGTC
  GGTATTCCCT CTCATCAGAG CGCAGAACTG TGGTACTTTG CAGTCAGGGT GCGTGGAAAA
  TAAAATCTTC CCTTCTTCCT CCTTAAACTT CTCCATCCCT CCCATGTTTC TGTGTAAATT
  AACCATTTGT CAGTAATGAG GAGGAGTGAA ATCAGGCAAA TAACCACCTT GGCTCTCTCG
  R
  TTTGAGCTTG CATTAGTTTG CTGACTGACA ATCTTTCAGG CAGGAGTGAG CGAGCAAAGG
  TGGTCTGCCA AGGGACCCAG CCTAGCGCAC TGTGTCCAGG GCAGGAGGGA GTAGACACGT
  GACTCAGAGG TGTGGCTTCC AGCTCAACCT AGGATAGCAG CCCGGCCTTC TGTGGTATGT
  CTCCACTGCC CTCTAGTGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss62244552	NES17198686	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G	G		G	G	A	G	G	G
ss139267584	ENSMUSSNP4936092	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs46296227					SNP	A	A	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62244552	NES17198686	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:33956997 () rs orientation: forward

Symbol	Name	Function Class
Rr490523	regulatory region 490523	within coordinates
Rr490524	regulatory region 490524	183 bp proximal
Shld2	shieldin complex subunit 2	1993 bp downstream