rs46297097 SNP Detail

Summary

• ID
  rs46297097
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:58157517 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCTATTGG ACTCATTCCA
  CAGCTATATG TCTTTCTAGT TAAAAGCCAG GTAGAGAAAT AAACTCCTCT TTGAGAGAGC
  CTCCCAAGTG CACCCTAGTG GAGACTTCGA CTCAGTACTG GGATGGGTTT GCCTGGAAAG
  GCATCCCTCA GCTGAGAATG GAGCATGAGA TAGAAAATGA CCAGGAATTC AGAGCTGCTC
  R
  GACATTTTAA AGAGAGACAA ACACTTGGAA AGGAGTGGAG GTCTGAAACA GGAGAGCCAG
  TTTGGGAAGT AGTCAGGGCC ATTTTCAGAT TTAAGATGGG GCTCCTGCGA AGTGATACCA
  GAGAAGATGA GATGAATCAT ACGGTGAGAA ATGGACCGAT TCTACATATG ATCTGAGAGT
  TGGTGAAGGG TTTCTTACAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61405743	NES16787258	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46297097					SNP	A	A	A	A	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61405743	NES16787258	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:58157517 () rs orientation: forward

Symbol	Name	Function Class
Pml	promyelocytic leukemia	448 bp upstream
Rr679902	regulatory region 679902	within coordinates
Rr679903	regulatory region 679903	95 bp distal
Rr679904	regulatory region 679904	829 bp proximal
Rr679905	regulatory region 679905	1153 bp proximal
Tssr89890	transcription start site region 89890	594 bp upstream
Tssr89891	transcription start site region 89891	562 bp upstream
Tssr89892	transcription start site region 89892	443 bp upstream