rs46297900 SNP Detail

Summary

• ID
  rs46297900
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69489650 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGTACCTGT GCTTCTTGCC CAGCACTCAT GTAAGACAGC
  TCACAAGTGC CCCTAACTCC TGTAACTGCA GCTCCAGGGG AGCCAAACCT CTGGCCTCCT
  Y
  AGTCAGTGCA CCCACGTACA CAAACCCACA CTCAGACGCA CATGCAGATA CATCATTTCT
  TTTTTTTTTT TTAAATAAAA ATTGAAGTTA GGGGCTGGC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323730627	CHEV_11_69412326	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs46297900					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69489650 () rs orientation: forward

Symbol	Name	Function Class
Atp1b2	ATPase, Na+/K+ transporting, beta 2 polypeptide	912 bp downstream
Gm72066	predicted gene, 72066	905 bp upstream
Rr386229	regulatory region 386229	583 bp upstream
Rr450033	regulatory region 450033	724 bp proximal
Rr450034	regulatory region 450034	765 bp proximal
Rr450035	regulatory region 450035	1217 bp proximal
Tssr3544	transcription start site region 3544	1871 bp downstream
Tssr102487	transcription start site region 102487	1189 bp upstream
Tssr108712	transcription start site region 108712	1183 bp downstream
Tssr108713	transcription start site region 108713	1328 bp downstream
Tssr108714	transcription start site region 108714	1410 bp downstream
Tssr108715	transcription start site region 108715	1423 bp downstream
Tssr108716	transcription start site region 108716	1735 bp downstream
Tssr108717	transcription start site region 108717	1760 bp downstream
Tssr108718	transcription start site region 108718	1819 bp downstream
Tssr108719	transcription start site region 108719	1830 bp downstream
Tssr108720	transcription start site region 108720	1834 bp downstream
Tssr108721	transcription start site region 108721	1848 bp downstream
Tssr108722	transcription start site region 108722	1929 bp downstream
Tssr108723	transcription start site region 108723	1957 bp downstream