rs46299068 SNP Detail

Summary

• ID
  rs46299068
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:144103632 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAAACACTT ATGTCGAAGG
  AGTCTATAGC TTCTAATTGG GCCACCGTCT CAAAATAATC AAGCTGGTCT TAATAACACT
  GCTTGAGGCT GGCTAGCAAG CAAAGAGGCT TCCTCAAGGA AGGTATTACT AATCCGTGGT
  TTTCACACTT ACAGCCTCAT TCATAGCATT AGTAAACGGC CCAGGGACCA GAGGATAGGG
  M
  ACCCAAATGA GCTGTGAGAA CCATCTCTGT CCACCTGAGA CAGGCAGCTC TCGGAGCTAC
  AGAGTGCTCA CAGTTCCAAG TTGAAGAAGG GTTTGCCCGT CTCGGAAAGG ATCCCGGTGG
  AAATTCAATT GAGTCCACTG GCTTCATCCG TGGACCAGCG AGGCTCCCTG TAGCATTTGA
  AGGTTCGCCC GTTTTGGCAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss136030748	ENSMUSSNP1017631	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs46299068					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:144103632 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13898	CpG island 13898	1080 bp distal
Gm65349	predicted gene, 65349	1132 bp upstream
Rr586643	regulatory region 586643	1153 bp distal
Rr586644	regulatory region 586644	983 bp distal
Rr586645	regulatory region 586645	1439 bp proximal