rs46299772 SNP Detail

Summary

• ID
  rs46299772
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:119898693 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGCTTTGT TTTTGTTTGT
  TTTGTTGTTG AGATAGGTCC CACACATCCT GGGCTGGACT TTAAATAGCT ATGGGGTTAA
  AAAGACCTTG AGCCTTTCAT CCTCCTGCCT CCACTGCCCA AGTCTGGGAT GCTCCACCGT
  TTATGAGGGG CTGGGGATGG AACTCAGGCT AGTCTAACAT TTTGCCATCT GAGCTGTATC
  Y
  CCAGGGCATT CAAGCTCTTC CTCGTGTTCC TGTCTGGAAT CTGGCTGAGA ATCTCCTACT
  GTTGCTGTCA ACCAATCTCA TCCGTGTCTG TTTCCCACAC AACTCCACCT TCAGCTGGGG
  CCTGAGGGTA CCCTGTGCCC ACCACTCCCT TCCCATCCAT CTTATTCATC TCACCATCCG
  GCCATCTACC CATGTGCCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	MSM/Ms	SM/J
ss137051611	ENSMUSSNP4952793	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		T
ss323224497	CHEV_9_119978745	CHEVERUD	SCREENING_POP	f	SNP			T		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	MSM/Ms	SM/J
rs46299772					SNP	C	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:119898693 () rs orientation: forward

Symbol	Name	Function Class
Cx3cr1	C-X3-C motif chemokine receptor 1	1331 bp upstream
Gm33858	predicted gene, 33858	within coordinates
Rr688628	regulatory region 688628	1034 bp proximal
Tssr92011	transcription start site region 92011	1336 bp upstream
Tssr92012	transcription start site region 92012	1326 bp upstream