rs46300453 SNP Detail

Summary

• ID
  rs46300453
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:113624864 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAACTATTTC ACCTTCAGTG
  AAAGTTTACA TCCTTTGCCA TGTATAATTT TTCCTAAGTT GGTCTGGGAC AGACACTTTT
  ACCCAGGCTG TTTATGTGAG TACAGAGACG TGCATTTTCC CCCCAAATAC TCTGTAAGTA
  GCATTTTAGA ACTTAAAAGT CTGCCTTTAA ATTGTGTTAG CTGTAACAAT ATTCCAGAAA
  Y
  ACGTTATTAT ATACATTCCA ACAGTAGTAC CTACTAGCCA ATATTCTTTT CAGTTCATTG
  CTTGCTATTA TTACTTGTTT AAACAATTTT CCAATCATAT CAGTGAAAAG TATTTCAGAC
  ATTATCAAAC ATAGCTGCTT TCTGGCAACC CTTCTCATCT TCATATGACT CGTGTGTGTA
  TGTGTGTGTG TGTTTGTGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss61225173	NES16842631	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs46300453					SNP	T	T	T	T	T	T	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61225173	NES16842631	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:113624864 () rs orientation: forward

Symbol	Name	Function Class
Clasp2	CLIP associating protein 2	within coordinates
Rr205836	regulatory region 205836	1263 bp distal