rs46301383 SNP Detail

Summary

• ID
  rs46301383
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:12328637 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGTTAGTAG AAAGGATGGT
  GTCGCATCAA ATCTCTGTGG AGATGAGGAA AGGTTCTTTG CCCAGCTTCA GCACACGCAG
  GGCACAGAGC AGCGCCATAA ACACCAGCAG TTTATGACAT GGCAAGAGGA AAAACAAGCA
  AGCAAACAAA TATGTAAGGG CCGAGCTGGT TTTAGAAGGC TTTTTGCCAC CAAGGCAGCT
  Y
  ATGCCTGGCT GGAGCCAGCA GTTGTCCTAG GTCCCACTCT CTTCTGAGGC AAGGTTCTGG
  GGGAGGAGAC TCCTGAGCTG GTTGGGGTCC AAAGACCTGA GGTCTAATTA CCAGTGTAAT
  TAGGGTAAGA ACAAGTTGCT CTCTGCAGAG GGCCTCTGTG CGCTGGGAGA AAGTGTTTTT
  AAGCATTCCC ATGGAGTCGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss60572185	NES16031352	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T		T	C		T
ss322497663	CHEV_8_12278637	CHEVERUD	SCREENING_POP	f	SNP								T			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs46301383					SNP	T	T	T	T	T	T	T	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60572185	NES16031352	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:12328637 () rs orientation: forward

Symbol	Name	Function Class
A230072I06Rik	RIKEN cDNA A230072I06 gene	188 bp upstream
Rr659697	regulatory region 659697	within coordinates