rs46302669 SNP Detail

Summary

• ID
  rs46302669
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:123300759 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTTAAAGAG GCTCTCCTTA TGTACCAGAA
  AGCCTAACAC ATGAAATGGC AAGCAGTTAA GAGGCCATAC AAATTACTGA CCACTTGTGG
  AACCATGACC TTACAGCAGC CCTTTTTAAA TAGGAATGAA GGCCCAGAGA CATCTGGTGG
  K
  AATTTGGATC CCAATAATCT CTGTGCAGAG GAATCACCCC CTGGTTCCTA AGCTTCCCTA
  AATAAGGCCT ATCATACTCT TGAGTGTGAG TCTCAGTACC TCAAATCCCA GACACAAAAG
  CCTCTAAGGT CACAAGTATC CCCTCAGCAC                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss60445537	NES15941772	PERLEGEN	MM_PANEL2	f	SNP	G		T	G	G	G	G	G	G		G	G		G
ss135766546	ENSMUSSNP2285315	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	T				G
ss320920385	CHEV_3_123210028	CHEVERUD	SCREENING_POP	f	SNP										G			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs46302669					SNP	G	G	T	G	G	G	G	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60445537	NES15941772	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123300759 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13780	CpG island 13780	828 bp proximal
Prss12	serine protease 12 neurotrypsin (motopsin)	513 bp downstream
Rr397991	regulatory region 397991	76 bp downstream
Rr584523	regulatory region 584523	191 bp distal
Rr584524	regulatory region 584524	56 bp distal
Rr584525	regulatory region 584525	1264 bp proximal
Rr584526	regulatory region 584526	1809 bp proximal
Snhg8	small nucleolar RNA host gene 8	442 bp downstream
Snora24	small nucleolar RNA, H/ACA box 24	827 bp downstream
Tssr31551	transcription start site region 31551	1440 bp upstream
Tssr31552	transcription start site region 31552	1478 bp upstream
Tssr35502	transcription start site region 35502	1220 bp downstream
Tssr35503	transcription start site region 35503	1805 bp downstream