rs46303552 SNP Detail

Summary

• ID
  rs46303552
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:34584250 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGAAAGCA AGAAAATCAA
  TTGATGTATC AGTCAATCAG TCAACCATAG CCCCCTATAT TCTTCAAAGA GGGAACAACC
  TTGTGAGTGT GCCATTTGCC TGATTTAACA ACTTCTGTTA CTTAGAGATT TTCTGCAGTG
  CTAAAGCAAC ATCTCTTATA TCAAGGCACA ATGCCTAAGT GTCCAGCCCA CCGTTTCCTA
  Y
  CCATCAGAGC AAAGAAGCAG AAGGATGCAG GCCCATCCTC CTTGGGCTTG TACATTAGCA
  TTCCAAGTCC CACTAGACCA AAATCAGGCA TTGTGCTCTG AACCACTAAA GAAAATGAGA
  TCAATGAAAG TTGTATCCTT TCTGTGGCTT TGCTACCTGA GGCTTCCAAA GTTTAGGCTT
  AAGGCAAACA CAGTGGGTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63254850	NES17488605	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T	C	T	T	T	C		T	T	C	T
ss146341876	ENSMUSSNP6754370	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46303552					SNP	T	T	T	T	T	T	T	C	T	T	T	C	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63254850	NES17488605	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:34584250 () rs orientation: forward

Symbol	Name	Function Class
Ifit3b	interferon-induced protein with tetratricopeptide repeats 3B	1120 bp upstream
Rr405932	regulatory region 405932	662 bp upstream
Rr546756	regulatory region 546756	630 bp proximal
Rr546757	regulatory region 546757	1131 bp proximal
Tssr156136	transcription start site region 156136	673 bp upstream
Tssr156137	transcription start site region 156137	1077 bp upstream