rs46304152 SNP Detail

Summary

• ID
  rs46304152
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:145858244 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CACATTCTCT TCTCTTAAGG AGGATGTTTA AAAAAAAATG
  TAGCAGTGCT GAAGTCTGCC AACAAAGCCA GAAGACTTGG GACACATTTT GAACAAAAAC
  G
  GAAGTCAGGG ATGAATAGAT TTAGAGCCAA GCTCTCTGCT CAGTGGCTCC CCTGTCGATG
  ACACGAAACA CAAATTAAGA CTGTTTTTGA AGCCTAGTG                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss136042543	ENSMUSSNP3623101	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss321009677	CHEV_3_145815453	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46304152					SNP	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:145858244 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13913	CpG island 13913			1991 bp distal
Mcoln2	mucolipin 2			Intron
				Noncoding-Transcript-Variant
Rr398113	regulatory region 398113			within coordinates
Rr586939	regulatory region 586939			1205 bp distal
Rr586940	regulatory region 586940			within coordinates
Rr586941	regulatory region 586941			462 bp proximal
Rr586942	regulatory region 586942			1315 bp proximal
Tssr36031	transcription start site region 36031			1384 bp downstream