rs46307879 SNP Detail

Summary

• ID
  rs46307879
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:99944320 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTAGGAGG ACTGGTCACC
  TCTGTCGCCT GCAACCTACT CCAGGAGATA TCTGGTTTCC CCGCTGACTG TCCTGCAGAA
  GGTGACATGG AACAATTCAT CAGGATGGAG CGTTCAGGCA GACTGGCTGG TGAGTAAGCA
  CAAAGCTGAC ATCCCGTGTC TCTTGCACTG TATCAACTAG CTGGAGTAGA TTTGCCTCTT
  K
  AAAAAATAAG AGAAATGAGG CCCCAGGCAT AACCATGCCC TGTGATTTAC TCAGGCTAGC
  AGTAGACTTA AGTGATTTCT TGGACTACTT GCATGCTTTA ATCCCCCTAA GAAGAAACTG
  AGATCTTCAT GGACCCTCAA ACCTGCCTTT CTTTATCTGG TTTGATTTAA TTCAAAAATA
  CATTCACTAG GCTTTAGAAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss132717842	ENSMUSSNP182462	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T	G
ss323830635	CHEV_11_99914808	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46307879					SNP	G	T	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:99944320 () rs orientation: forward

Symbol	Name	Function Class
Gm11571	predicted gene 11571	within coordinates
Tssr104894	transcription start site region 104894	1379 bp downstream
Tssr104895	transcription start site region 104895	1229 bp downstream
Tssr104896	transcription start site region 104896	1202 bp downstream