rs46309279 SNP Detail

Summary

• ID
  rs46309279
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:135718717 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCGTT GGGGTGAAGT GTGGGAAAGA
  S
  GGGCATGAAG GGGGTGGTAG GGCTA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss145546441	ENSMUSSNP471355	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C		G
ss319993413	CHEV_1_137687556	CHEVERUD	SCREENING_POP	f	SNP				C		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs46309279					SNP	C	C	C	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135718717 () rs orientation: forward

Symbol	Name	Function Class
Rr372093	regulatory region 372093	1100 bp upstream
Rr419278	regulatory region 419278	1829 bp distal
Rr419280	regulatory region 419280	678 bp distal
Rr419281	regulatory region 419281	953 bp distal
Rr419282	regulatory region 419282	1258 bp proximal
Rr419283	regulatory region 419283	1890 bp proximal
Tnni1	troponin I, skeletal, slow 1	Intron