rs46309988 SNP Detail

Summary

• ID
  rs46309988
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:138476769 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCTG GTTTTGTCCA CTTTACACAT
  S
  CTACAGTTGG GAAAGAAGGA GTTTC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147656041	ENSMUSSNP5561313	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G
ss321376731	CHEV_4_138305373	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46309988					SNP	C	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138476769 () rs orientation: forward

Symbol	Name	Function Class
Pla2g2f	phospholipase A2, group IIF	1073 bp downstream
Rr603010	regulatory region 603010	1218 bp distal
Rr603011	regulatory region 603011	1459 bp distal
Rr603012	regulatory region 603012	350 bp distal
Rr603013	regulatory region 603013	582 bp distal