rs46310060 SNP Detail

Summary

• ID
  rs46310060
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:37954732 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGGTATCT ATACCTCAAA
  TTAACTGCAC TCATTGGATT GTCTTTGTGA TAGTTTGATG ATTTCCAGAT GCAGATATGA
  ATAGAAAGGG GGTGGAGACG CAGCACACTC ATTCAAAATG GAACCAGAAC CTCAGCTACC
  ACATGTGTTT TAAATATATT ATCCATACAA TTAAGAATAC AGTATTATAA ACCAGCTCTA
  Y
  AGATCTTAGG ATAAAACCAA TGACAGCAAG TCTTCTAAGC CACAAAGAGG GTCTTAATAA
  TAGAGATTCC ATGGTGACAC ACTCTGAATA TTCCTGAATA TTACAAACCT TCCTTAAAAA
  AACAAACATG TTCCTTTCTG ACATTTTTCC TTCATTCATA TTCATATATA TACATATATA
  TATCCTTCCA TGTATATATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	WSB/EiJ
ss61763997	NES17707548	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	WSB/EiJ
rs46310060					SNP	C	C	C	C	C	C	T	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61763997	NES17707548	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:37954732 () rs orientation: forward

Symbol	Name	Function Class
Tssr122114	transcription start site region 122114	821 bp upstream