rs46311821 SNP Detail

Summary

• ID
  rs46311821
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:65199955 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAGCTTGA ACTCAGAAAT
  CCACCTGACT CTTTAATCCC AAGTGCTGGG ATTAAAGGCA TGTACCACCA TCACCTGGCT
  TTGCTGCTTG TCTTTTTAAA AAATATTTTT AGAACTGGAG ATATGACTCA GCATTTAAGA
  GCACGTTGCT CTTGCAGAGG TACCAGGTTC CCATCACCCA CATGGTGATT CACAGCCATG
  C
  TTAACCCTAG GTCCAGGGGA TTCAACAGGC ACACTTGTGA TGCACTCACA TTCATGCAGG
  CAAAATGTTC CTATGCATGA AGCAAAGATT TTTAAAAAAT GTGTGTGAAG CCGGGAGTGG
  TGGAACACGC CTTTAATCCC AGCACTTGGG AGGCAGAGGC AGGCGGATTT CTGAGTTCGA
  GGCCAGCCTG GTCTACAGAG                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss136566844	ENSMUSSNP5698676	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss322986412	CHEV_9_65140480	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46311821					SNP	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:65199955 () rs orientation: forward

Symbol	Name	Function Class
Clpx	caseinolytic mitochondrial matrix peptidase chaperone subunit	1587 bp upstream
Cpgi21943	CpG island 21943	1322 bp proximal
Rr201316	regulatory region 201316	1755 bp distal
Rr206623	regulatory region 206623	245 bp proximal
Rr368805	regulatory region 368805	1306 bp upstream
Tssr85679	transcription start site region 85679	1484 bp upstream
Tssr85680	transcription start site region 85680	1506 bp upstream
Tssr85681	transcription start site region 85681	1602 bp upstream
Tssr85682	transcription start site region 85682	1697 bp upstream
Tssr85683	transcription start site region 85683	1722 bp upstream
Tssr85684	transcription start site region 85684	1754 bp upstream
Tssr85685	transcription start site region 85685	1767 bp upstream
Tssr85686	transcription start site region 85686	1884 bp upstream