rs46312749 SNP Detail

Summary

• ID
  rs46312749
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:164286878 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTCAAGATG TCGCAGAGCA CTGTGTTGGA CATGACCATT
  CTTTCCATCC TTGTTGGCTG AAAATCCGCC CTTATTTTCA TCCACCGAGC CCCTGAACAG
  M
  TTTCCACACA GCTCTTATGG TGATGACACA GCAGAAAACA TGGCGAGGCT TCTGCAGTGG
  CTGCAGAAAA GCCTGTCCCT GGAGCGACCT GGCCGGTCG                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145978942	ENSMUSSNP91152	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46312749					SNP	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:164286878 () rs orientation: forward

Symbol	Name	Function Class
Atp1b1	ATPase, Na+/K+ transporting, beta 1 polypeptide	954 bp upstream
Cpgi945	CpG island 945	233 bp distal
Gm32391	predicted gene, 32391	within coordinates
Gm70485	predicted gene, 70485	302 bp downstream
Gm70492	predicted gene, 70492	563 bp upstream
Tssr9788	transcription start site region 9788	779 bp downstream
Tssr9789	transcription start site region 9789	762 bp downstream
Tssr14746	transcription start site region 14746	1297 bp upstream
Tssr14747	transcription start site region 14747	946 bp upstream
Tssr14748	transcription start site region 14748	572 bp upstream
Tssr14749	transcription start site region 14749	1530 bp downstream
Tssr14750	transcription start site region 14750	1545 bp downstream