rs46313428 SNP Detail

Summary

• ID
  rs46313428
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:167200345 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGGTGGTGC CCATCAGGGC
  AAAGAGGGCA AGAGAGCCCA CGGCTCCTCG ATACCGCTTG CTAGGGTCTG AAAAAGAAGA
  CAGCGGAAGT CACCAGGACA TCCACAAGCC ATTGTGCTCT AGCATCTGAG GTCATATCGT
  CAACCGCGTG CTATTGGGAG GTTGGCCAAC TCTAGCCTAG AGCCACCAGT ACGCTAGAAT
  Y
  TATGTGCAAG GTAACTGTAC ATTAGCATTG CCTAGACTAT GGAGGACTCT GTAAGTCAAG
  CAACTTTGTC TTAGGCCCAG TAGGAGCATC TGCCTCCGGA ATGACACGTA GCCTTTTCCT
  CTCCGATAGC CATTTATCCC AGCCGTGGTC AGGTTTTGCT GACGCAGCAC CTTGGTTTGA
  TTCCTGGCAG CTCTGGCTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	NZW/LacJ	WSB/EiJ
ss60342645	NES15844335	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	NZW/LacJ	WSB/EiJ
rs46313428					SNP	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60342645	NES15844335	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:167200345 () rs orientation: forward

Symbol	Name	Function Class
Gm71125	predicted gene, 71125	1385 bp upstream
Mgst3	microsomal glutathione S-transferase 3	Intron
Rr422702	regulatory region 422702	1241 bp proximal
Rr422703	regulatory region 422703	1396 bp proximal
Tssr14852	transcription start site region 14852	354 bp upstream
Tssr14853	transcription start site region 14853	745 bp downstream
Tssr14854	transcription start site region 14854	1765 bp downstream