rs46313868 SNP Detail

Summary

• ID
  rs46313868
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:20210229 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAGAATAG GGAAAGACAG
  CACTGCAATC CTCAATATAG TCCTCAACTT ACAGTCGTTG CTGAACTTCC AATTTCCAAC
  TTCATATTAG TTCAAAAGCA TTATCCATCA TCAGAAACCA CTTTGAATTT TGATATTTCA
  TTGGTTAGTG ATATGCAATA TGGTATTCTT CCATGATGCC GAACACCTGC CCCAGTCCCC
  M
  GGCAGCAGTG AGAGCATTAA GGTAAACACA TAAATGCTAC TCTTTTGCTA GGCTATGGCA
  CTGGGTACTA GATGTGGCAG AAGATTCTAT ATATTCACAG AGGGTCTATA AAGATACAGT
  CCCACACCCA TCATCCTAGG CCATATCTAC ACCATTGCTC CTTGGCCTGT GGGCTTAGAC
  CTCCTCCACT AGACTCAACC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss134671671	ENSMUSSNP1604358	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs46313868					SNP	A	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:20210229 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13009	CpG island 13009	792 bp distal
Gyg1	glycogenin 1	1001 bp upstream
Rr574068	regulatory region 574068	1459 bp distal
Rr574069	regulatory region 574069	396 bp distal
Rr574070	regulatory region 574070	801 bp distal
Tssr841	transcription start site region 841	993 bp upstream
Tssr32710	transcription start site region 32710	943 bp upstream