rs46314430 SNP Detail

Summary

• ID
  rs46314430
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134945317 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCATCAGAT CCCAATACAG
  ATGGTTGTGA GCCACCATGT GGTTGCTGGG AATTGAACTC AAGACCTCTG GAAGAGCAGT
  CAGTGCTCTT AACCACTGAG CCATCTCTCC ACCCCAACAC ACCAGCTTCT AAAACCATCT
  TTTCTTGTCT CAGATCTTTA CATGCAACAA ATGCCCATTA GTATTGCATT AAGCTTGGTT
  Y
  GTCACAGAAT TAACATTGTG GCCTTGAAAG GTCACCACAC AGAATTAGAC AGTGTCAGCC
  CAGTTCACAA TTATCTATTG TCTACTATTA TAATTATTAT TATTATATTA TATATAATAT
  AGTATATAAT ATGATATAAT ATAAAATGTA ATATATAATA TAATATATTA TTATTATATT
  TATCTATTAT ATCCCTATTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss147541513	ENSMUSSNP1854096	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss321351219	CHEV_4_134773921	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs46314430					SNP	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134945317 () rs orientation: forward

Symbol	Name	Function Class
Clic4	chloride intracellular channel 4	within coordinates
Rr86243	regulatory region 86243	117 bp distal
Rr86244	regulatory region 86244	1484 bp proximal
Tssr43955	transcription start site region 43955	1610 bp upstream
Tssr43956	transcription start site region 43956	1579 bp upstream
Tssr43957	transcription start site region 43957	1329 bp upstream
Tssr43958	transcription start site region 43958	1193 bp upstream
Tssr43959	transcription start site region 43959	1172 bp upstream
Tssr43960	transcription start site region 43960	1020 bp upstream
Tssr43961	transcription start site region 43961	961 bp upstream
Tssr43962	transcription start site region 43962	915 bp upstream
Tssr43963	transcription start site region 43963	856 bp upstream
Tssr43964	transcription start site region 43964	744 bp upstream
Tssr43965	transcription start site region 43965	606 bp downstream