rs46314674 SNP Detail

Summary

• ID
  rs46314674
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135763420 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCTGCTGA GAAGACTGGA
  ATGGAGAGAG CCAGCTGCCC CCTAACTTAG TTTCCTTTTA GTTCTCATCA CCCCCTGAGC
  CCCACCTTGT GCCAGTCACT CTGTGTGGGC TGGTGGACAT AAATGTTCAA GCTGCAGTAC
  AAACTTGGTC CTGATCTTAT GGATCTTTTG ATCTAGTGAG CAAGCCAGAC ACAGCAGCTC
  R
  CCATGACCAC AGTTTCTAAG CCCGGGGAGA ATTCCAATAA TCCCCTCTAC CACACTCTTA
  CTGCCAGACT AAGGAGAGTG GCCATTCTTG AGTTACTTCC GCCAGCGGAA GGAAGGAGGC
  TACTTCTGTG AGGATGACAT AGTGTGTGGC CTTGGGGCTC ATGGAGAAGA CTAGATACCC
  TCACCAAGGC CTGCAGAGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ
ss60803390	NES16472581	PERLEGEN	MM_PANEL2	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ
rs46314674					SNP	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60803390	NES16472581	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135763420 () rs orientation: forward

Symbol	Name	Function Class
Rr419292	regulatory region 419292	819 bp distal
Rr419293	regulatory region 419293	1255 bp distal
Rr419294	regulatory region 419294	182 bp proximal
Rr419295	regulatory region 419295	742 bp proximal
Rr419296	regulatory region 419296	1210 bp proximal
Tnnt2	troponin T2, cardiac	672 bp upstream
Tssr9005	transcription start site region 9005	698 bp upstream