rs46315207 SNP Detail

Summary

• ID
  rs46315207
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:20412626 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCAAATGCA AGTAAGGTTT
  TCAGTCATTT TTTTTTTCTT TCAAACTATT TCTTGAGCTC TTAAACTAAT GTGAATTAAA
  TGTGCTCTTT ATGGGAGGTA CTGTGCCAAA TGAAGAAAAC AAGAAAGATT CCTGACTTCA
  TAAAGGCAAT ACTCTAGTGC TTACCTTAGT TTATACTTCT CTGGAATGAC TCGTCTCCAG
  S
  ACATGTTACA TAATTCCCAA TGAGCCTGAA TCATTTCCTC CATGACGTTT AGATATATGA
  ACCTTTAGCT ATACGTAACA TTTAGACAAG CTACCTTAGC ACTGCTTAGA AACAGCATTT
  ATCCTGGTTC TTAGTAAACC CAAGGCTCTC TTTCTAATTT CCACTGGTGA TTTCAAATGA
  GTCCAGAAAA CATTCAAGGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss63231359	NES17473149	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	C	G	G	G		G	C	C
ss325739964	CHEV_19_20509752	CHEVERUD	SCREENING_POP	f	SNP										C				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs46315207					SNP	G	G	G	G	G	C	G	G	G	C	G	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63231359	NES17473149	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:20412626 () rs orientation: forward

Symbol	Name	Function Class
D19Mit23	DNA segment, Chr 19, Massachusetts Institute of Technology 23	635 bp proximal
Gm32689	predicted gene, 32689	7 bp upstream
Rr356916	regulatory region 356916	226 bp distal
Rr356917	regulatory region 356917	1775 bp proximal
Rr361508	regulatory region 361508	1788 bp proximal
Rr364130	regulatory region 364130	356 bp distal