rs46316686 SNP Detail

Summary

• ID
  rs46316686
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:32426931 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTCCCTCC ATAGTCTTCT
  AGCTTACGGT GAGATTGCCT GGGTCCATCT ACACAGAAAT TGATATTCTA TTGTATTCTG
  ACAGAAATTA TTCAAATTTC ACATTATGTG TTCTCAGAAT TACCAAGAGA ACTAGCTATG
  AATACAGTGG TTGCAACGTA ATTCCTTCAT GAGGAGACAG GAAGCTAGTG ATTGTCTATG
  Y
  AATCTTGTTC TGAGAGGAAG TATGCTTTTC TAGGAAAACG ATTTTCTCTT TATAAGGCTG
  CCATCATTTT GGTACATGGA AAACTGATTC ATGGTCACCG TTTTTATTTT TGCCATCAGC
  CTACTGTGTA GAGTGTGCAC TTTAGTATAG GAAAGCAAGT TTCTCTCTTT TATTCTTTTT
  TTTTTTTTAG CTTTTATTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52371652	NES15392161	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46316686					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52371652	NES15392161	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:32426931 () rs orientation: forward

Symbol	Name	Function Class
Ccdc71l	coiled-coil domain containing 71 like	1857 bp upstream
Cpgi4541	CpG island 4541	1500 bp proximal
Rr403262	regulatory region 403262	1527 bp upstream
Rr464758	regulatory region 464758	1282 bp proximal
Tssr113128	transcription start site region 113128	1760 bp upstream
Tssr113129	transcription start site region 113129	1832 bp upstream
Tssr113130	transcription start site region 113130	1940 bp upstream
Tssr113131	transcription start site region 113131	1979 bp upstream